Table 1.

TCGA skin cutaneous melanoma MAP3K8 gene rearrangements

Split/span
TCGA IDMAP3K8 Coordinatea3′ Partner CoordinateaStrandRNADNACopy numberHistologyDist. to stopDNA region
TCGA-ER-A196chr10:30748430chr20:56937997(+/−)1712/70726/4YesALM2Exonic RAB22A(3′ UTR)
TCGA-D3-A2J6chr10:30748430chr10:4473457(+/+)100/66NA/NAYesNOS19Intronic ENKUR(I2)
TCGA-EE-A20Ichr10:30748430chr10:25344748(+/+)695/261NA/NAYesNOS9Intronic GPR98(I85)
TCGA-FR-A2OSchr10:30748430chr5:90376401(+/−)175/82NA/NANANOS5Exonic LYZL2(E5)
TCGA-FS-A1Z4chr10:30748430chr10:30900953(+/−)233/106NA/NANoNOS44Intergenic
TCGA-EB-A4IQchr10:30748430chr3:59110263(+/−)5/3NA/NAYesNOS17Intergenic
  • Abbreviations: ALM, acral lentiginous melanoma; NA, not available; NOS, not otherwise specified.

  • a Hg19 alignment coordinates.