Table 1.

Overview of RNA-seq samples analyzed

Cancer typeNumber of RNA-seq libraries analyzedNumber of patients with survival data
AbbreviationFull nameUnpaired cancerPairedUnpaired healthyCancer totalHealthy totalCombinedAliveDeadCombined
BRCABreast invasive carcinoma98111301,0941131,2079111301,041
COADColon adenocarcinoma25526152814132220858266
HNSCHead and neck squamous cell carcinoma47743152044564316190506
KICHKidney chromophobe4125066259157865
KIRCKidney renal clear cell carcinoma45972053172603357165522
KIRPKidney renal papillary cell carcinoma2563202883232021630246
LIHCLiver hepatocellular carcinoma32150037150421222105327
LUADLung adenocarcinoma45655351158569336135471
LUSCLung squamous cell carcinoma44451049551546287181468
PRADProstate adenocarcinoma442520494525464477454
STADStomach adenocarcinoma37532340735442240126366
THCAThyroid carcinoma4455905045956348614500
Pan-cancerAcross all 12 cancer types analyzed4,952610225,5626326,1944,0831,1495232