Table 1.

Microarray studies examining TGFβ-induced EMT

Cell lineTissue of cell line originPlatformReplicatesGEO accession numberReference
HMLEBreastAffymetrix- HT_HG-U133A3GSE24202Taube and colleagues (5) PMID: 20713713
MCF10ABreastAgilent-014850 Whole Human Genome2GSE28569Deshiere and colleagues (2013) PMID: 22562247
HMEC-TRBreastAffymetrix- HG-U133_Plus_22GSE28448Hesling and colleagues (2011) PMID: 21597466
A549LungAffymetrix- HG-U133_Plus_23GSE17708Keshamouni and colleagues(2010) PMID: 19118450
A549LungAffymetrix- HG-U133_Plus_23GSE49644Sun and colleagues (2014) PMID: 25379179
HCC827LungAffymetrix- HG-U133_Plus_23GSE49644Sun and colleagues (2014) PMID: 25379179
NCI-H358LungAffymetrix- HG-U133_Plus_23GSE49644Sun and colleagues (2014) PMID: 25379179
HK-2KidneyAffymetrix- HG-U133A_23GSE23338Walsh and colleagues (2008) PMID: 25379179
Human proximal tubular cell lineKidneyIllumina- HumanWG-6 v3.03GSE20247Hills and colleagues (2010) PMID: 20197308
Panc-1PancreasAffymetrix- HG-U133_Plus_23GSE23952Maupin and colleagues (2010) PMID: 20885998
  • NOTE: To identify a signature for TGFβ-induced EMT that is not specific to a particular type of cancer, we used cell lines that represent a variety of cancers.