Table 2.

Comparison of sequencing methods in reported HNSCC cell lines and tumors

HNSCC cell lineHNSCC tumor
DatabaseBarretina et alGarnett et alStransky et alAgrawal et al
Sample number30207432
SNP determinationAffymetrix SNP6.0Affymetrix SNP6.0Affymetrix SNP6.0Affymetrix SNP6.0
Sequencing methodIlluminaCapillary sequencingIlluminaIllumina/SOLiD
Genes for sequencing1,65177Whole-exomeWhole-exome
Numbers of mutated genes65474,897501
Number of mutations1,637497,165609